Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE XpertMycobacterium tuberculosis/rifampicin (Xpert MTB/RIF) assay has been endorsed by the World Health Organization (WHO) for diagnosis of extrapulmonary tuberculosis (EPTB), while the sensitivity and specificity have not been fully evaluated. 28708053 2017
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE XpertMycobacterium tuberculosis/rifampicin (Xpert MTB/RIF) assay has been endorsed by the World Health Organization (WHO) for diagnosis of extrapulmonary tuberculosis (EPTB), while the sensitivity and specificity have not been fully evaluated. 28708053 2017
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE XpertMycobacterium tuberculosis/rifampicin (Xpert MTB/RIF) assay has been endorsed by the World Health Organization (WHO) for diagnosis of extrapulmonary tuberculosis (EPTB), while the sensitivity and specificity have not been fully evaluated. 28708053 2017
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 Biomarker disease BEFREE XpertMycobacterium tuberculosis/rifampicin (Xpert MTB/RIF) assay has been endorsed by the World Health Organization (WHO) for diagnosis of extrapulmonary tuberculosis (EPTB), while the sensitivity and specificity have not been fully evaluated. 28708053 2017
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE Xpert<sup>®</sup> MTB/RIF assay for extrapulmonary tuberculosis and rifampicin resistance. 30148542 2018
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE Xpert<sup>®</sup> MTB/RIF assay for extrapulmonary tuberculosis and rifampicin resistance. 30148542 2018
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a diagnostic evaluation study. 30583052 2019
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a diagnostic evaluation study. 30583052 2019
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a systematic review and meta-analysis. 24696113 2014
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE Xpert MTB/RIF assay for the diagnosis of extrapulmonary tuberculosis: a systematic review and meta-analysis. 24696113 2014
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.050 GeneticVariation disease BEFREE When we stratified available data according to type of disease, we found that TNF-α -238 G/A and -308 G/A polymorphisms were significantly correlated with the risk of extrapulmonary tuberculosis (EPTB), while the -857 C/T polymorphism was significantly correlated with the risk of pulmonary tuberculosis (PTB). 30295952 2018
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 GeneticVariation disease BEFREE We tested consecutive samples from patients suspected of extrapulmonary tuberculosis with Xpert MTB/Rif, evaluated its sensitivity and specificity against solid and/or liquid culture and CGS. 26671654 2016
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 GeneticVariation disease BEFREE We tested consecutive samples from patients suspected of extrapulmonary tuberculosis with Xpert MTB/Rif, evaluated its sensitivity and specificity against solid and/or liquid culture and CGS. 26671654 2016
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.020 Biomarker disease BEFREE We recently detected Mycobacterium tuberculosis lipoarabinomannan (LAM) and CFP-10 (Rv3874) biomarkers from the urinary EVs of pulmonary TB (PTB) and extrapulmonary TB (EPTB) patients by immuno-polymerase chain reaction (I-PCR) assay and the results were compared with the analogous enzyme-linked immunosorbent assay (ELISA). 31549171 2019
Entrez Id: 5199
Gene Symbol: CFP
CFP
0.020 Biomarker disease BEFREE We compared several gene targets of Mycobacterium tuberculosis, including IS6110, devR, and genes encoding MPB-64 (mpb64), 38kDa (pstS1), 65kDa (hsp65), 30kDa (fbpB), ESAT-6 (esat6), and CFP-10 (cfp10) proteins, using PCR assays on 105 EPTB specimens. 26632387 2016
Entrez Id: 3569
Gene Symbol: IL6
IL6
0.010 GeneticVariation disease BEFREE We also performed the analyses by sample types in IL-6 -174 C/G polymorphism, and significant decreased TB risk was observed in pulmonary tuberculosis group (C allele vs. G allele: OR=0.69, 95% CI=0.52-0.93; CG vs. GG: OR=0.69, 95% CI=0.52-0.91; CC+CG vs. GG: OR=0.71, 95% CI=0.55-0.93), and pulmonary tuberculosis plus extra-pulmonary tuberculosis mixed group (CC vs. GG: OR=0.44, 95% CI=0.22-0.88; CC vs. CG+GG: OR=0.48, 95% CI=0.25-0.94). 26169021 2015
Entrez Id: 54509
Gene Symbol: RHOF
RHOF
0.070 Biomarker disease BEFREE We aimed to evaluate the GeneXpert® MTB/RIF test for the diagnosis of extrapulmonary tuberculosis. 26654321 2016
Entrez Id: 80196
Gene Symbol: RNF34
RNF34
0.070 Biomarker disease BEFREE We aimed to evaluate the GeneXpert® MTB/RIF test for the diagnosis of extrapulmonary tuberculosis. 26654321 2016
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 Biomarker disease BEFREE We aimed to evaluate the GeneXpert® MTB/RIF test for the diagnosis of extrapulmonary tuberculosis. 26654321 2016
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE We aimed to evaluate the GeneXpert® MTB/RIF test for the diagnosis of extrapulmonary tuberculosis. 26654321 2016
Entrez Id: 3458
Gene Symbol: IFNG
IFNG
0.060 Biomarker disease BEFREE Usefulness of the whole-blood interferon-gamma release assay for diagnosis of extrapulmonary tuberculosis. 19070449 2009
Entrez Id: 9564
Gene Symbol: BCAR1
BCAR1
0.030 GeneticVariation disease BEFREE URAL2 (NEW-1) (28/88; 31.8%) and CAS1-DELHI (25/84; 29.8%) genotypes were predominant in EPTB and PTB strains, respectively. 30513341 2019
Entrez Id: 253962
Gene Symbol: CACNA1G-AS1
CACNA1G-AS1
0.010 GeneticVariation disease BEFREE URAL2 (NEW-1) (28/88; 31.8%) and CAS1-DELHI (25/84; 29.8%) genotypes were predominant in EPTB and PTB strains, respectively. 30513341 2019
Entrez Id: 54892
Gene Symbol: NCAPG2
NCAPG2
0.070 Biomarker disease BEFREE Two diagnostic methods (Gene Xpert MTB and culture (LJ and MGIT) were used for EPTB diagnosis. 30654769 2019
Entrez Id: 4498
Gene Symbol: MT1JP
MT1JP
0.070 Biomarker disease BEFREE Two diagnostic methods (Gene Xpert MTB and culture (LJ and MGIT) were used for EPTB diagnosis. 30654769 2019